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Link to Provirus Sequence Database (PSD)
Retrovirus Integration Database (RID) v2.0
RID database query page
Choose virus and subtype
Virus:
HIV1
HTLV1
MLV
ALV
SIV
HBRV
Subtype:
---- All subtypes or select ----
B
C
Choose host and chromosomes
Host:
Homo sapiens-hg19 - hg19
Mus Musculus-mm9 - mm9
Gallus gallus-galGal4 - galGal4
Rhesus macaque-rheMac8 - rheMac8
Chromosome:
-- All chromosomes or select --
chr1
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
chr10
chr11
chr12
chr13
chr14
chr15
chr16
chr17
chr18
chr19
chr20
chr21
chr22
chrX
chrY
chr23
chr24
chr25
chr26
chr27
chr28
chr29
chr30
chr31
chr32
chr33
chrW
chrZ
chrLGE64
chrMT
Query options
Enter an insertion site or a range separated by a comma:
Enter a sample name(s) (comma separated, up to 2.
Samples in RID
):
Enter a gene name:
Enter a tissue name(s) (comma separated, up to 2.
Tissues in RID
):
Select a tissue source:
-- all sources or select --
In vitro
In vivo
Ex vivo
Select provirus orientation:
-- all orientations or select --
+
-
Query by ART:
-- select a value --
Yes
No
Query by viremic:
-- select a value --
Yes
No
Check to view intergenetic regions only:
Enter a pubmed id(s) (comma separated, up to 2):
Integration site information selection
Site information:
-- All attributes or select --
PID
tissue/cell
tissue source
age(year)
sex
race/ethnicity
transmission mode
on ART
ART duration(year)
viremic
sample comment
Chromosome
Insert position
LTR
Insert orientation
Insert count
Inserted gene name
Inserted gene refseq id
Inserted gene id
Inserted gene orientation
Exon intron
Nearest gene name
Nearest gene refseq id
Nearest gene id
Nearest gene orientation
Nearest gene distance
Comment
Pubmed id
Advanced queries
Show genes detected by two experiments (enter two Pubmed ids below) or all experiments (leave the Pubmed id boxes blank)
Pubmed ID 1:
Pubmed ID 2:
© RID. Supported by
Advanced Biomedical Computational Science (ABCS)
at Leidos/FNLCR.