RID Data Submission
Users are welcome to submit integration site information and patient demographics in the following Excel templates (examples are shown in these templates):
| 1. Integration site data (download the template here) |
| patient/sample_id | tissue/cell | chromosome | position | provirus_strand | LTR | clone size | comment |
|---|---|---|---|---|---|---|---|
| C906 | PBMC | chr1 | 6366159 | + | 5' | 1 | |
| A907 | PBMC | chr2 | 7866678 | - | 3' | 1 | |
| B909 | CD4 | chr3 | 1000506 | + | both | 1 | |
| 101 | Jurkat cell line | chr4 | 6365158 | + | both | 1 | |
| 102 | ACH-2 | chr5 | 1000507 | - | 5' | 1 |
- Provirus strand is defined as “+” if the provirus integrated in the same orientation as the chromosome being integrated and “-“ if the provirus integrated in the opposite orientation.
| 2. Patient demographic if available (download the template here) |
| patient_id | tissue/cell | tissue source | age(year) | sex | race/ethnicity | trasmission_mode | on_ART | ART_duration(year) | viremic | sample_comment |
|---|---|---|---|---|---|---|---|---|---|---|
| C906 | PBMC | in vivo | 59 | F | Black | yes | 8 | no | ||
| A907 | PBMC | in vivo | 6 | M | Black | mother to child | yes | 5 | no | |
| B909 | CD4 | in vivo | 59 | F | White | drug use | yes | 12 | no | |
| 101 | Jurkat cell line | in vitro | ||||||||
| 102 | ACH-2 cell line | in vitro |
The integration site data and patient demographics should be sent via email to Mary Kearney, Ph.D at rid@mail.nih.gov with the Excel file(s) attached.